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Nano bots dude! Nano bots!!
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This is another one of those "a miracle occurs" moments.
The common concept of nanobots is of microscopic robots doing awesome things.
What nanotechnology is
actually about are complex molecular assemblies of artificial design with particular chemical properties. A virus shell is basically a natural nanobot.
The complexity required for operational nano-scale repair and combat drones is not possible with the resolution of atoms.