Some flaws Moffat is directly addressing, such as the Daleks: he's given them a rest for a while, because as the Doctor's most popular and therefore most frequent villain, they are the most reliably defeated of his opponents. It's telling that in the only Dalek story of Moffat's tenure, back in the last season, they succeeded in their plan (unfortunately their plan appeared to be to convert their entire race into Volvos).
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