That's ok
I like how you try to make out the plot and if people knew certain things, which could explain a lot of the story's mysteries, but I think it all boilz (lol) down to: Did the story board people actually think all of this stuff out and we're meant to solve this puzzle? or did they simply have the plot there in front of our face the whole time, and there really was nothing else to it? I'm going to hint towards the latter, as there's a million other possibilities that could have come up when we look at the mysteries of the game.
I like to keep a level head and try to think things out logically, but I also have an imaginative side that likes what you're saying. You just keep devising theories. They're quite interesting
