There will be more Spartan II's in Halo 2, atleast if nothing else happens between the end of Halo:First Strike, and Halo 2. In the third book, titled First Strike, Master Chief meets up with the other Spartans Kelly, Linda, and like five or less. I won't say too much but it does look like they will be in Halo 2.
Also, another "Halo" is figured to make an appearance in Halo 2. Just like a return of the flood, etc. Theres a few other things that I'm trying to remember that you forgot to mention in your list, but its nothing totally important.
According to the book I think they survived by being in a bunker deep beneath the surface of Reach.
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